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Ridom GmbH software ridom seqsphere
Software Ridom Seqsphere, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/software+ridom+seqsphere/ridom+seqsphere/pm40662699-81-13-15
Average 90 stars, based on 1 article reviews
software ridom seqsphere - by Bioz Stars, 2026-10
90/100 stars

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Related Articles

Software:

Article Title: Impact of the COVID-19 Pandemic on Lung Cancer Screening Processes in a Northeast Tertiary Health Care Network
Article Snippet: The recently observed increase in invasive Streptococcus pyogenes infections causes concern in Europe.. However, conventional molecular typing methods lack discriminatory power to aid investigations of outbreaks caused by S. pyogenes.. Therefore, there is an urgent need for high-resolution molecular typing methods to assess genetic relatedness between S. pyogenes isolates.

Article Title: Multicenter Preparedness Exercise Enables Rapid Development of Cluster-Specific PCR-Based Screening Assays from Bacterial Genomic Data.
Article Snippet: PCR-based screening assays targeting strain-specific genetic markers allow the timely detection and specific differentiation of bacterial strains.. Especially in situations where an infection cluster occurs, fast assay development is crucial for supporting targeted control measures.. However, the turnaround times (TATs) for assay setup may be high due to insufficient knowledge about screening assay methods, workflows, and software tools.

Article Title: A core-genome multilocus sequence typing scheme for the detection of genetically related Streptococcus pyogenes clusters
Article Snippet: .. The standardized analysis workflow of this cgMLST scheme is performed using easy-to-use software (Ridom SeqSphere+) and is made available for users of this software ( https://www.cgmlst.org/ncs/schema/30585223/ ). ..

Article Title: Evaluation of three commercial rapid immunoassays for the diagnosis of Clostridioides difficile infection.
Article Snippet: DNA extraction and sequencing using Illumina MiSeq (Illumina, San Diego, CA, United States) were performed as previously described by Werner et al (19). .. Multi-locus sequence typing (MLST) and core-genome MLST (cgMLST) were performed using the software Ridom SeqSphere+ (Ridom GmbH, Münster, Germany) and 1928D (1928 Diagnostics, Gothenburg, Sweden). .. To compare the tcdC gene sequences of the study strains, the software BioEdit sequence alignment editor (Tom Hall, USA) was used to align the sequences to a wild-type tcdC sequence from reference strain ATCC 43255.

Article Title: Dissemination of bla NDM -harboring plasmids in carbapenem-resistant and hypervirulent Klebsiella pneumoniae
Article Snippet: .. Core genome multilocus sequence typing (cgMLST) analysis of isolates was performed by comparing the 2,358 core genes of K. pneumoniae using the software Ridom SeqSphere+ (v.4.1.9) (Ridom GmbH, Germany), with which a phylogenetic tree was constructed. ..

Sequencing:

Article Title: Evaluation of three commercial rapid immunoassays for the diagnosis of Clostridioides difficile infection.
Article Snippet: DNA extraction and sequencing using Illumina MiSeq (Illumina, San Diego, CA, United States) were performed as previously described by Werner et al (19). .. Multi-locus sequence typing (MLST) and core-genome MLST (cgMLST) were performed using the software Ridom SeqSphere+ (Ridom GmbH, Münster, Germany) and 1928D (1928 Diagnostics, Gothenburg, Sweden). .. To compare the tcdC gene sequences of the study strains, the software BioEdit sequence alignment editor (Tom Hall, USA) was used to align the sequences to a wild-type tcdC sequence from reference strain ATCC 43255.

Article Title: Dissemination of bla NDM -harboring plasmids in carbapenem-resistant and hypervirulent Klebsiella pneumoniae
Article Snippet: .. Core genome multilocus sequence typing (cgMLST) analysis of isolates was performed by comparing the 2,358 core genes of K. pneumoniae using the software Ridom SeqSphere+ (v.4.1.9) (Ridom GmbH, Germany), with which a phylogenetic tree was constructed. ..

Construct:

Article Title: Dissemination of bla NDM -harboring plasmids in carbapenem-resistant and hypervirulent Klebsiella pneumoniae
Article Snippet: .. Core genome multilocus sequence typing (cgMLST) analysis of isolates was performed by comparing the 2,358 core genes of K. pneumoniae using the software Ridom SeqSphere+ (v.4.1.9) (Ridom GmbH, Germany), with which a phylogenetic tree was constructed. ..



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